MiSeq Control Software for simple run setup and monitoring

MiSeq Control Software

Overview of MiSeq Control Software

MiSeq Control Software is pre-installed on the MiSeq sequencing system. This software guides you through the steps to load the flow cell and reagents, and provides an overview of quality statistics that you can monitor as the run progresses.

During the run, Miseq Control Software performs the following tasks:

  • Operates the flow cell stage
  • Dispenses reagents
  • Controls flow cell temperatures
  • Captures images of clusters on the flow cell

The software performs runs according to parameters specified in the sample sheet.

miseq system

Download MiSeq Control Software or Get Support

See changes introduced in the latest versions of MiSeq Control Software, and download the newest version. Or access MiSeq technical support information.

Download MiSeq Control Software
View MiSeq Support Information
Common MiSeq Questions

Access a variety of frequently asked questions (FAQs) about MiSeq data analysis, reagents, and more.

View MiSeq FAQs
For Research Use Only

Not for use in diagnostic procedures (except as specifically noted).

Innovative technologies

At Illumina, our goal is to apply innovative technologies to the analysis of genetic variation and function, making studies possible that were not even imaginable just a few years ago. It is mission critical for us to deliver innovative, flexible, and scalable solutions to meet the needs of our customers. As a global company that places high value on collaborative interactions, rapid delivery of solutions, and providing the highest level of quality, we strive to meet this challenge. Illumina innovative sequencing and array technologies are fueling groundbreaking advancements in life science research, translational and consumer genomics, and molecular diagnostics.

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